Well the roof is done and I'm unimpressed. Honestly it looks like a pretty poor job, but I don't know enough about it to be able to tell. The edges are cut fairly ragged and overlap the flashing, there's more than a few bubbles in it and some heavy wrinkles, and it doesn't appear that they fixed the roof deck.
Too late to edit, but I uploaded a few pics to check on the quality on another forum I frequent. General consensus is that the job is garbage.